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BIOCOMP
2008
15 years 8 months ago
Reverse Engineering Module Networks by PSO-RNN Hybrid Modeling
Background: Inferring a gene regulatory network (GRN) from high throughput biological data is often an under-determined problem and is a challenging task due to the following reas...
Yuji Zhang, Jianhua Xuan, Benildo de los Reyes, Ro...
BMCBI
2011
15 years 1 months ago
The impact of quantitative optimization of hybridization conditions on gene expression analysis
Background: With the growing availability of entire genome sequences, an increasing number of scientists can exploit oligonucleotide microarrays for genome-scale expression studie...
Peter Sykacek, David P. Kreil, Lisa A. Meadows, Ri...
CEC
2010
IEEE
15 years 1 months ago
Parameter estimation with term-wise decomposition in biochemical network GMA models by hybrid regularized Least Squares-Particle
High-throughput analytical techniques such as nuclear magnetic resonance, protein kinase phosphorylation, and mass spectroscopic methods generate time dense profiles of metabolites...
Prospero C. Naval, Luis G. Sison, Eduardo R. Mendo...
ICFP
2006
ACM
16 years 6 months ago
Good advice for type-directed programming aspect-oriented programming and extensible generic functions
Type-directed programming is an important idiom for software design. In type-directed programming the behavior of programs is guided by the type structure of data. It makes it pos...
Geoffrey Washburn, Stephanie Weirich
ICAPR
2005
Springer
16 years 9 hour ago
Hierarchical Clustering of Dynamical Systems Based on Eigenvalue Constraints
Abstract. This paper addresses the clustering problem of hidden dynamical systems behind observed multivariate sequences by assuming an interval-based temporal structure in the seq...
Hiroaki Kawashima, Takashi Matsuyama