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BMCBI
2010
153views more  BMCBI 2010»
15 years 6 months ago
Pash 3.0: A versatile software package for read mapping and integrative analysis of genomic and epigenomic variation using massi
Background: Massively parallel sequencing readouts of epigenomic assays are enabling integrative genome-wide analyses of genomic and epigenomic variation. Pash 3.0 performs sequen...
Cristian Coarfa, Fuli Yu, Christopher A. Miller, Z...
PVLDB
2008
82views more  PVLDB 2008»
15 years 6 months ago
Mining non-redundant high order correlations in binary data
Many approaches have been proposed to find correlations in binary data. Usually, these methods focus on pair-wise correlations. In biology applications, it is important to find co...
Xiang Zhang, Feng Pan, Wei Wang 0010, Andrew B. No...
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SENSYS
2010
ACM
15 years 4 months ago
Evolution and sustainability of a wildlife monitoring sensor network
As sensor network technologies become more mature, they are increasingly being applied to a wide variety of applications, ranging from agricultural sensing to cattle, oceanic and ...
Vladimir Dyo, Stephen A. Ellwood, David W. Macdona...
BMCBI
2011
15 years 1 months ago
Hierarchical graphs for rule-based modeling of biochemical systems
Background: In rule-based modeling, graphs are used to represent molecules: a colored vertex represents a component of a molecule, a vertex attribute represents the internal state...
Nathan W. Lemons, Bin Hu, William S. Hlavacek
JAMIA
2011
94views more  JAMIA 2011»
14 years 9 months ago
Protein-network modeling of prostate cancer gene signatures reveals essential pathways in disease recurrence
Objective Uncovering the dominant molecular deregulation among the multitude of pathways implicated in aggressive prostate cancer is essential to intelligently developing targeted...
James L. Chen, Jianrong Li, Walter M. Stadler, Yve...
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