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BMCBI
2010
104views more  BMCBI 2010»
15 years 6 months ago
Analysis of protein-protein docking decoys using interaction fingerprints: application to the reconstruction of CaM-ligand compl
Background: Protein-protein docking for proteins with large conformational changes was analyzed by using interaction fingerprints, one of the scales for measuring similarities amo...
Nobuyuki Uchikoga, Takatsugu Hirokawa
CIKM
2004
Springer
15 years 11 months ago
A practical web-based approach to generating topic hierarchy for text segments
It is crucial in many information systems to organize short text segments, such as keywords in documents and queries from users, into a well-formed topic hierarchy. In this paper,...
Shui-Lung Chuang, Lee-Feng Chien
BMCBI
2004
120views more  BMCBI 2004»
15 years 6 months ago
Optimal cDNA microarray design using expressed sequence tags for organisms with limited genomic information
Background: Expression microarrays are increasingly used to characterize environmental responses and hostparasite interactions for many different organisms. Probe selection for cD...
Yian A. Chen, David J. Mckillen, Shuyuan Wu, Matth...
ICDE
2004
IEEE
133views Database» more  ICDE 2004»
16 years 7 months ago
GenExplore: Interactive Exploration of Gene Interactions from Microarray Data
DNA Microarray provides a powerful basis for analysis of gene expression. Data mining methods such as clustering have been widely applied to microarray data to link genes that sho...
Yong Ye, Xintao Wu, Kalpathi R. Subramanian, Liyin...
PPOPP
2009
ACM
16 years 6 months ago
Application-aware management of parallel simulation collections
This paper presents a system deployed on parallel clusters to manage a collection of parallel simulations that make up a computational study. It explores how such a system can ext...
Siu Yau, Vijay Karamcheti, Denis Zorin, Kostadin D...