We present an algorithm, Hierarchical ISOmetric SelfOrganizing Map (H-ISOSOM), for a concise, organized manifold representation of complex, non-linear, large scale, high-dimension...
Background: Protein-protein interactions play a key role in biological processes of proteins within a cell. Recent high-throughput techniques have generated protein-protein intera...
The goal of the paper is to present a novel Chi-square similarity measure and assess its performance through comparison with well-known similarity measures such as Cosine, Dice, a...
Oktay Ibrahimov, Ishwar K. Sethi, Nevenka Dimitrov...
Stencil computation (SC) is of critical importance for broad scientific and engineering applications. However, it is a challenge to optimize complex, highorder SC on emerging clus...
Liu Peng, Richard Seymour, Ken-ichi Nomura, Rajiv ...
Background: Sequence motifs representing transcription factor binding sites (TFBS) are commonly encoded as position frequency matrices (PFM) or degenerate consensus sequences (CS)...