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» Hiding Communication Latency in Data Parallel Applications
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ICPPW
2009
IEEE
15 years 3 months ago
A Scalable Parallel Approach for Peptide Identification from Large-Scale Mass Spectrometry Data
Identifying peptides, which are short polymeric chains of amino acid residues in a protein sequence, is of fundamental importance in systems biology research. The most popular appr...
Gaurav Ramesh Kulkarni, Ananth Kalyanaraman, Willi...
VLDB
1994
ACM
137views Database» more  VLDB 1994»
15 years 10 months ago
Performance of Data-Parallel Spatial Operations
The performance of data-parallel algorithms for spatial operations using data-parallel variants of the bucket PMR quadtree, R-tree, and R+-tree spatial data structures is compared...
Erik G. Hoel, Hanan Samet
IPSN
2009
Springer
16 years 28 days ago
Application-informed radio duty-cycling in a re-taskable multi-user sensing system
As sensor networks mature, there will be an increasing need for re-usable, dynamically taskable software systems that support multiple concurrent applications. In this paper, we c...
Omprakash Gnawali, Jongkeun Na, Ramesh Govindan
CLUSTER
2002
IEEE
15 years 11 months ago
I/O Analysis and Optimization for an AMR Cosmology Application
In this paper, we investigate the data access patterns and file I/O behaviors of a production cosmology application that uses the adaptive mesh refinement (AMR) technique for it...
Jianwei Li, Wei-keng Liao, Alok N. Choudhary, Vale...
SOSP
2007
ACM
16 years 3 months ago
Sinfonia: a new paradigm for building scalable distributed systems
We propose a new paradigm for building scalable distributed systems. Our approach does not require dealing with message-passing protocols—a major complication in existing distri...
Marcos Kawazoe Aguilera, Arif Merchant, Mehul A. S...