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» Heuristics for the Phylogeny Problem
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CPAIOR
2004
Springer
16 years 11 hour ago
Models and Symmetry Breaking for 'Peaceable Armies of Queens'
We discuss a di cult optimization problem on a chess-board, requiring equal numbers of black and white queens to be placed on the board so that the white queens cannot attack the b...
Barbara M. Smith, Karen E. Petrie, Ian P. Gent
AAAI
2004
15 years 8 months ago
Effective Approaches for Partial Satisfaction (Over-Subscription) Planning
In many real world planning scenarios, agents often do not have enough resources to achieve all of their goals. Consequently, they are forced to find plans that satisfy only a sub...
Menkes van den Briel, Romeo Sanchez Nigenda, Minh ...
RECOMB
2004
Springer
16 years 7 months ago
Computational identification of evolutionarily conserved exons
Phylogenetic hidden Markov models (phylo-HMMs) have recently been proposed as a means for addressing a multispecies version of the ab initio gene prediction problem. These models ...
Adam C. Siepel, David Haussler
RECOMB
1997
Springer
15 years 10 months ago
On the complexity and approximation of syntenic distance
The paper studies the computational complexity and approximation algorithms for a new evolutionary distance between multi-chromosomal genomes introduced recently by Ferretti, Nade...
Bhaskar DasGupta, Tao Jiang, Sampath Kannan, Ming ...
ISBRA
2010
Springer
15 years 5 months ago
A Consensus Tree Approach for Reconstructing Human Evolutionary History and Detecting Population Substructure
The random accumulation of variations in the human genome over time implicitly encodes a history of how human populations have arisen, dispersed, and intermixed since we emerged as...
Ming-Chi Tsai, Guy E. Blelloch, R. Ravi, Russell S...