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187
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RECOMB
2006
Springer
16 years 7 months ago
2006
Springer
Abstract. So far, most methods for identifying sequences under selection based on comparative sequence data have either assumed selectional pressures are the same across all branch...
199
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RECOMB
2005
Springer
16 years 7 months ago
2005
Springer
We describe a novel method for efficient reconstruction of phylogenetic trees, based on sequences of whole genomes or proteomes, whose lengths may greatly vary. The core of our me...
188
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RECOMB
2005
Springer
16 years 7 months ago
2005
Springer
Abstract. With ever increasing amount of available data on protein-protein interaction (PPI) networks and research revealing that these networks evolve at a modular level, discover...
214
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RECOMB
2004
Springer
16 years 7 months ago
2004
Springer
Phylogenetic hidden Markov models (phylo-HMMs) have recently been proposed as a means for addressing a multispecies version of the ab initio gene prediction problem. These models ...
200
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RECOMB
2003
Springer
16 years 7 months ago
2003
Springer
Protein sequence alignments are more reliable the shorter the evolutionary distance. Here, we align distantly related proteins using many closely spaced intermediate sequences as ...