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IJCAI
2007
15 years 7 months ago
Incremental Construction of Structured Hidden Markov Models
This paper presents an algorithm for inferring a Structured Hidden Markov Model (S-HMM) from a set of sequences. The S-HMMs are a sub-class of the Hierarchical Hidden Markov Model...
Ugo Galassi, Attilio Giordana, Lorenza Saitta
RIVF
2008
15 years 7 months ago
Speeding up subset seed algorithm for intensive protein sequence comparison
Abstract--Sequence similarity search is a common and repeated task in molecular biology. The rapid growth of genomic databases leads to the need of speeding up the treatment of thi...
Van Hoa Nguyen, Dominique Lavenier
BIOCOMP
2006
15 years 7 months ago
Dynamic Bayesian Network (DBN) with Structure Expectation Maximization (SEM) for Modeling of Gene Network from Time Series Gene
Exploring gene regulatory network is a key topic in molecular biology. In this paper, we present a new dynamic Bayesian network (DBN) framework embedded with structural expectatio...
Yu Zhang, Zhidong Deng, Hongshan Jiang, Peifa Jia
BIOCOMP
2006
15 years 7 months ago
PAC: Progressive Alignment with Consensus Sequences
Computation of multiple sequence alignments is one of the major open problems in computational molecular biology. The purpose of this study was to provide a new method, PAC (Progre...
Ke Liu, Mansur H. Samadzadeh
DILS
2010
Springer
15 years 7 months ago
On Matching Large Life Science Ontologies in Parallel
Matching life science ontologies to determine ontology mappings has recently become an active field of research. The large size of existing ontologies and the application of comple...
Anika Gross, Michael Hartung, Toralf Kirsten, Erha...