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WADS
2007
Springer
130views Algorithms» more  WADS 2007»
16 years 13 days ago
Approximating the Maximum Sharing Problem
In the maximum sharing problem (MS), we want to compute a set of (non-simple) paths in an undirected bipartite graph covering as many nodes as possible of the first layer of the ...
Amitabh Chaudhary, Danny Z. Chen, Rudolf Fleischer...
CPHYSICS
2006
124views more  CPHYSICS 2006»
15 years 6 months ago
Collision-free spatial hash functions for structural analysis of billion-vertex chemical bond networks
State-of-the-art molecular dynamics (MD) simulations generate massive datasets involving billion-vertex chemical bond networks, which makes data mining based on graph algorithms s...
Cheng Zhang, Bhupesh Bansal, Paulo S. Branicio, Ra...
RECOMB
2009
Springer
16 years 7 months ago
Searching Protein 3-D Structures in Linear Time
Finding similar structures from 3-D structure databases of proteins is becoming more and more important issue in the post-genomic molecular biology. To compare 3-D structures of tw...
Tetsuo Shibuya
RECOMB
2009
Springer
16 years 7 months ago
A Robust Bayesian Two-Sample Test for Detecting Intervals of Differential Gene Expression in Microarray Time Series
Abstract. Understanding the regulatory mechanisms that are responsible for an organism's response to environmental changes is an important question in molecular biology. A fir...
Oliver Stegle, Katherine J. Denby, David L. Wild, ...
ISMB
2000
15 years 7 months ago
Towards a Systematics for Protein Subcellular Location: Quantitative Description of Protein Localization Patterns and Automated
Determination of the functions of all expressed proteins represents one of the major upcoming challenges in computational molecular biology. Since subcellular location plays a cru...
Robert F. Murphy, Michael V. Boland, Meel Velliste