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» Graphs in molecular biology
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BMCBI
2010
139views more  BMCBI 2010»
15 years 6 months ago
TOPSAN: a collaborative annotation environment for structural genomics
Background: Many protein structures determined in high-throughput structural genomics centers, despite their significant novelty and importance, are available only as PDB depositi...
Dana Weekes, S. Sri Krishna, Constantina Bakolitsa...
COCOON
2007
Springer
16 years 15 days ago
On the Hardness of Optimization in Power Law Graphs
Our motivation for this work is the remarkable discovery that many large-scale real-world graphs ranging from Internet and World Wide Web to social and biological networks exhibit ...
Alessandro Ferrante, Gopal Pandurangan, Kihong Par...
PAKDD
2010
ACM
203views Data Mining» more  PAKDD 2010»
15 years 11 months ago
Finding Itemset-Sharing Patterns in a Large Itemset-Associated Graph
Both itemset mining and graph mining have been studied independently. Here, we introduce a novel data structure, which is an unweighted graph whose vertices contain itemsets. From ...
Mutsumi Fukuzaki, Mio Seki, Hisashi Kashima, Jun S...
ESA
2009
Springer
109views Algorithms» more  ESA 2009»
15 years 11 months ago
Linear-Time Recognition of Probe Interval Graphs
The interval graph for a set of intervals on a line consists of one vertex for each interval, and an edge for each intersecting pair of intervals. A probe interval graph is a varia...
Ross M. McConnell, Yahav Nussbaum
KDD
2005
ACM
127views Data Mining» more  KDD 2005»
15 years 12 months ago
Mining closed relational graphs with connectivity constraints
Relational graphs are widely used in modeling large scale networks such as biological networks and social networks. In this kind of graph, connectivity becomes critical in identif...
Xifeng Yan, Xianghong Jasmine Zhou, Jiawei Han