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PVLDB
2010
200views more  PVLDB 2010»
15 years 4 months ago
SAPPER: Subgraph Indexing and Approximate Matching in Large Graphs
With the emergence of new applications, e.g., computational biology, new software engineering techniques, social networks, etc., more data is in the form of graphs. Locating occur...
Shijie Zhang, Jiong Yang, Wei Jin
CHI
2010
ACM
16 years 1 months ago
G-nome surfer: a tabletop interface for collaborative exploration of genomic data
Molecular and computational biologists develop new insights by gathering heterogeneous data from genomic databases and leveraging bioinformatics tools. Through a qualitative study...
Orit Shaer, Guy Kol, Megan Strait, Chloe Fan, Cath...
DILS
2005
Springer
15 years 12 months ago
The Multiple Roles of Ontologies in the BioMediator Data Integration System
BioMediator is a data integration system that provides a common interface to multiple Internet-accessible databases containing information about genetics and molecular biology. Ont...
Peter Mork, Ron Shaker, Peter Tarczy-Hornoch
CPM
2004
Springer
107views Combinatorics» more  CPM 2004»
15 years 10 months ago
Sorting by Reversals in Subquadratic Time
The problem of sorting a signed permutation by reversals is inspired by genome rearrangements in computational molecular biology. Given two genomes represented as two signed permut...
Eric Tannier, Marie-France Sagot
ECCB
2008
IEEE
15 years 8 months ago
Towards de novo identification of metabolites by analyzing tandem mass spectra
Abstract. Mass spectrometry is among the most widely used technologies in proteomics and metabolomics. For metabolites, de novo interpretation of spectra is even more important tha...
Sebastian Böcker, Florian Rasche