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» Graphs in molecular biology
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EDBT
2009
ACM
241views Database» more  EDBT 2009»
16 years 28 days ago
GADDI: distance index based subgraph matching in biological networks
Currently, a huge amount of biological data can be naturally represented by graphs, e.g., protein interaction networks, gene regulatory networks, etc. The need for indexing large ...
Shijie Zhang, Shirong Li, Jiong Yang
RECOMB
2000
Springer
15 years 9 months ago
Tissue classification with gene expression profiles
Constantly improving gene expression profiling technologies are expected to provide understanding and insight into cancer related cellular processes. Gene expression data is also
Amir Ben-Dor, Laurakay Bruhn, Nir Friedman, Iftach...
ISCA
2007
IEEE
196views Hardware» more  ISCA 2007»
16 years 13 days ago
Anton, a special-purpose machine for molecular dynamics simulation
The ability to perform long, accurate molecular dynamics (MD) simulations involving proteins and other biological macromolecules could in principle provide answers to some of the ...
David E. Shaw, Martin M. Deneroff, Ron O. Dror, Je...
BMCBI
2010
193views more  BMCBI 2010»
15 years 6 months ago
MZmine 2: Modular framework for processing, visualizing, and analyzing mass spectrometry-based molecular profile data
Background: Mass spectrometry (MS) coupled with online separation methods is commonly applied for differential and quantitative profiling of biological samples in metabolomic as w...
Tomás Pluskal, Sandra Castillo, Alejandro V...
COMBINATORICA
2008
112views more  COMBINATORICA 2008»
15 years 6 months ago
On the rigidity of molecular graphs
The rigidity of squares of graphs in three-space has important applications to the study of flexibility in molecules. The Molecular Conjecture, posed in 1984 by T-S. Tay and W. Wh...
Bill Jackson, Tibor Jordán