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BMCBI
2010
201views more  BMCBI 2010»
15 years 3 months ago
IntelliGO: a new vector-based semantic similarity measure including annotation origin
Background: The Gene Ontology (GO) is a well known controlled vocabulary describing the biological process, molecular function and cellular component aspects of gene annotation. I...
Sidahmed Benabderrahmane, Malika Smaïl-Tabbon...
IFIP
2004
Springer
15 years 11 months ago
Efficient Algorithms for Handling Molecular Weighted Sequences
Abstract In this paper we introduce the Weighted Suffix Tree, an efficient data structure for computing string regularities in weighted sequences of molecular data. Molecular Wei...
Costas S. Iliopoulos, Christos Makris, Yannis Pana...
FOCS
2002
IEEE
15 years 11 months ago
Learning a Hidden Matching
We consider the problem of learning a matching (i.e., a graph in which all vertices have degree 0 or 1) in a model where the only allowed operation is to query whether a set of ve...
Noga Alon, Richard Beigel, Simon Kasif, Steven Rud...
LREC
2008
166views Education» more  LREC 2008»
15 years 7 months ago
KnoFusius: a New Knowledge Fusion System for Interpretation of Gene Expression Data
This paper introduces a new architecture that aims at combining molecular biology data with information automatically extracted from scientific literature (using text mining techn...
Pavel Smrz
BIOCOMP
2006
15 years 7 months ago
Improving the Efficiency of Sorting by Reversals
Sorting signed permutations by reversals is a fundamental problem in computationial molecular biology. In this paper we present an improved algorithm for sorting by reversals. Our...
Yijie Han