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HPCS
2007
IEEE
16 years 10 days ago
Utilizing Averaged Configuations from Molecular Dynamics Simulation Trajectories
One of the challenges in the large-scale simulations required for many molecular systems (such as those of biological interested) is the recording, monitoring and visualization of...
Peter G. Kusalik, K. Gillis, J. Vatamanu
TCSB
2010
15 years 4 months ago
Modelling Self-assembly in BlenX
Abstract. The process through which disordered components spontaneously arrange themselves into patterns is called self-assembly. Molecular self-assembly describes the process by w...
Roberto Larcher, Corrado Priami, Alessandro Romane...
ALMOB
2006
138views more  ALMOB 2006»
15 years 6 months ago
A combinatorial optimization approach for diverse motif finding applications
Background: Discovering approximately repeated patterns, or motifs, in biological sequences is an important and widely-studied problem in computational molecular biology. Most fre...
Elena Zaslavsky, Mona Singh
CORR
2010
Springer
135views Education» more  CORR 2010»
15 years 6 months ago
Optimal Design of a Molecular Recognizer: Molecular Recognition as a Bayesian Signal Detection Problem
Numerous biological functions--such as enzymatic catalysis, the immune response system, and the DNA-protein regulatory network--rely on the ability of molecules to specifically rec...
Yonatan Savir, Tsvi Tlusty
CORR
2010
Springer
105views Education» more  CORR 2010»
15 years 6 months ago
Molecular Recognition as an Information Channel: The Role of Conformational Changes
Molecular recognition, which is essential in processing information in biological systems, takes place in a crowded noisy biochemical environment and requires the recognition of a ...
Yonatan Savir, Tsvi Tlusty