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» Graphs in molecular biology
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JPDC
2007
138views more  JPDC 2007»
15 years 6 months ago
Distributed computation of the knn graph for large high-dimensional point sets
High-dimensional problems arising from robot motion planning, biology, data mining, and geographic information systems often require the computation of k nearest neighbor (knn) gr...
Erion Plaku, Lydia E. Kavraki
DASFAA
2011
IEEE
177views Database» more  DASFAA 2011»
14 years 10 months ago
Optimizing Incremental Maintenance of Minimal Bisimulation of Cyclic Graphs
Abstract. Graph-structured databases have numerous recent applications including the Semantic Web, biological databases and XML, among many others. In this paper, we study the main...
Jintian Deng, Byron Choi, Jianliang Xu, Sourav S. ...
ISMB
2003
15 years 7 months ago
Deriving phylogenetic trees from the similarity analysis of metabolic pathways
Comparative analysis of metabolic pathways in different genomes can give insights into the understanding of evolutionary and organizational relationships among species. This type ...
Maureen Heymans, Ambuj K. Singh
WABI
2007
Springer
16 years 15 days ago
A Graph Clustering Approach to Weak Motif Recognition
The aim of the motif recognition problem is to detect a set of mutually similar subsequences within a collection of biological sequences. The weak motif recognition problem on DNA ...
Christina Boucher, Daniel G. Brown, Paul Church
ICDM
2006
IEEE
132views Data Mining» more  ICDM 2006»
16 years 13 days ago
Mining for Tree-Query Associations in a Graph
New applications of data mining, such as in biology, bioinformatics, or sociology, are faced with large datasets structured as graphs. We present an efficient algorithm for minin...
Eveline Hoekx, Jan Van den Bussche