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IPPS
2009
IEEE
16 years 1 months ago
Accelerating HMMer on FPGAs using systolic array based architecture
HMMer is a widely-used bioinformatics software package that uses profile HMMs (Hidden Markov Models) to model the primary structure consensus of a family of protein or nucleic aci...
Yanteng Sun, Peng Li, Guochang Gu, Yuan Wen, Yuan ...
ISPAN
2009
IEEE
16 years 1 months ago
High-Performance Cloud Computing: A View of Scientific Applications
— Scientific computing often requires the availability of a massive number of computers for performing large scale experiments. Traditionally, these needs have been addressed by ...
Christian Vecchiola, Suraj Pandey, Rajkumar Buyya
EUROPAR
2009
Springer
16 years 1 months ago
Adaptive Peer Sampling with Newscast
Abstract. The peer sampling service is a middleware service that provides random samples from a large decentralized network to support gossip-based applications such as multicast, ...
Norbert Tölgyesi, Márk Jelasity
OOPSLA
2009
Springer
16 years 1 months ago
Parallel programming with object assemblies
We present Chorus, a high-level parallel programming model suitable for irregular, heap-manipulating applications like mesh refinement and epidemic simulations, and JChorus, an i...
Roberto Lublinerman, Swarat Chaudhuri, Pavol Cern&...
PDCAT
2009
Springer
16 years 1 months ago
CheCUDA: A Checkpoint/Restart Tool for CUDA Applications
Abstract—In this paper, a tool named CheCUDA is designed to checkpoint CUDA applications that use GPUs as accelerators. As existing checkpoint/restart implementations do not supp...
Hiroyuki Takizawa, Katsuto Sato, Kazuhiko Komatsu,...
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