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IV
2006
IEEE
125views Visualization» more  IV 2006»
16 years 23 days ago
Visualization of Lattice-Based Protein Folding Simulations
Analysis of the spacial structure of proteins including folding processes is a challenge for modern bioinformatics. Due to limited experimental access to folding processes, comput...
Sebastian Potzsch, Gerik Scheuermann, Peter F. Sta...
CIKM
2005
Springer
16 years 9 days ago
Exact match search in sequence data using suffix trees
We study suitable indexing techniques to support efficient exact match search in large biological sequence databases. We propose a suffix tree (ST) representation, called STA-DF, ...
Mihail Halachev, Nematollaah Shiri, Anand Thamildu...
IDEAL
2005
Springer
16 years 8 days ago
Patterns in Complex Systems Modeling
The design, development, and use of complex systems models raises a unique class of challenges and potential pitfalls, many of which are commonly recurring problems. Over time, res...
Janet Wiles, James Watson
LPAR
2005
Springer
16 years 7 days ago
Comparative Similarity, Tree Automata, and Diophantine Equations
The notion of comparative similarity ‘X is more similar or closer to Y than to Z’ has been investigated in both foundational and applied areas of knowledge representation and r...
Mikhail Sheremet, Dmitry Tishkovsky, Frank Wolter,...
WABI
2005
Springer
117views Bioinformatics» more  WABI 2005»
16 years 7 days ago
Faster Algorithms for Optimal Multiple Sequence Alignment Based on Pairwise Comparisons
Multiple Sequence Alignment (MSA) is one of the most fundamental problems in computational molecular biology. The running time of the best known scheme for finding an optimal ali...
Pankaj K. Agarwal, Yonatan Bilu, Rachel Kolodny