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IPPS
2006
IEEE
16 years 21 days ago
Implementation of a programmable array processor architecture for approximate string matching algorithms on FPGAs
Approximate string matching problem is a common and often repeated task in information retrieval and bioinformatics. This paper proposes a generic design of a programmable array p...
Panagiotis D. Michailidis, Konstantinos G. Margari...
IEEEPACT
2005
IEEE
16 years 8 days ago
Exploiting Coarse-Grained Parallelism to Accelerate Protein Motif Finding with a Network Processor
While general-purpose processors have only recently employed chip multiprocessor (CMP) architectures, network processors (NPs) have used heterogeneous multi-core architectures sin...
Ben Wun, Jeremy Buhler, Patrick Crowley
SC
2005
ACM
16 years 7 days ago
Separating Abstractions from Resources in a Tactical Storage System
ng Abstractions from Resources in a Tactical Storage System Douglas Thain† , Sander Klous∗ , Justin Wozniak† , Paul Brenner† , Aaron Striegel† , Jesus Izaguirre† † - ...
Douglas Thain, Sander Klous, Justin M. Wozniak, Pa...
DNA
2005
Springer
102views Bioinformatics» more  DNA 2005»
16 years 6 days ago
Chain Reaction Systems Based on Loop Dissociation of DNA
In the field of DNA computing, more and more efforts are made for constructing molecular machines made of DNA that work in vitro or in vivo. States of some of those machines are...
Keiichiro Takahashi, Satsuki Yaegashi, Atsushi Kam...
WABI
2004
Springer
109views Bioinformatics» more  WABI 2004»
16 years 1 days ago
Online Consensus and Agreement of Phylogenetic Trees
Computational heuristics are the primary methods for reconstruction of phylogenetic trees on large datasets. Most large-scale phylogenetic analyses produce numerous trees that are ...
Tanya Y. Berger-Wolf