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» Genome rearrangements with duplications
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RECOMB
2007
Springer
16 years 5 days ago
Parts of the Problem of Polyploids in Rearrangement Phylogeny
Abstract. Genome doubling simultaneously doubles all genetic markers. Genome rearrangement phylogenetics requires that all genomes analyzed have the same set of orthologs, so that ...
Chunfang Zheng, Qian Zhu, David Sankoff
WABI
2009
Springer
181views Bioinformatics» more  WABI 2009»
16 years 19 days ago
Decoding Synteny Blocks and Large-Scale Duplications in Mammalian and Plant Genomes
Abstract. The existing synteny block reconstruction algorithms use anchors (e.g., orthologous genes) shared over all genomes to construct the synteny blocks for multiple genomes. T...
Qian Peng, Max A. Alekseyev, Glenn Tesler, Pavel A...
BMCBI
2010
71views more  BMCBI 2010»
15 years 6 months ago
Genome rearrangements with duplications
Martin Bader
JCB
2008
102views more  JCB 2008»
15 years 6 months ago
DUPCAR: Reconstructing Contiguous Ancestral Regions with Duplications
Accurately reconstructing the large-scale gene order in an ancestral genome is a critical step to better understand genome evolution. In this paper, we propose a heuristic algorit...
Jian Ma, Aakrosh Ratan, Brian J. Raney, Bernard B....