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RECOMB
2007
Springer
16 years 6 months ago
Minimizing and Learning Energy Functions for Side-Chain Prediction
Abstract. Side-chain prediction is an important subproblem of the general protein folding problem. Despite much progress in side-chain prediction, performance is far from satisfact...
Chen Yanover, Ora Schueler-Furman, Yair Weiss
RECOMB
2004
Springer
16 years 6 months ago
Predicting Genetic Regulatory Response Using Classification: Yeast Stress Response
We present a novel classification-based algorithm called GeneClass for learning to predict gene regulatory response. Our approach is motivated by the hypothesis that in simple orga...
Manuel Middendorf, Anshul Kundaje, Chris Wiggins, ...
STOC
2005
ACM
135views Algorithms» more  STOC 2005»
16 years 6 months ago
On the bias of traceroute sampling: or, power-law degree distributions in regular graphs
Understanding the graph structure of the Internet is a crucial step for building accurate network models and designing efficient algorithms for Internet applications. Yet, obtaini...
Dimitris Achlioptas, Aaron Clauset, David Kempe, C...
SIGMOD
2007
ACM
124views Database» more  SIGMOD 2007»
16 years 6 months ago
Querying xml with update syntax
This paper investigates a class of transform queries proposed by XQuery Update [6]. A transform query is defined in terms of XML update syntax. When posed on an XML tree T, it ret...
Wenfei Fan, Gao Cong, Philip Bohannon
SIGMOD
2007
ACM
145views Database» more  SIGMOD 2007»
16 years 6 months ago
Why off-the-shelf RDBMSs are better at XPath than you might expect
To compensate for the inherent impedance mismatch between the relational data model (tables of tuples) and XML (ordered, unranked trees), tree join algorithms have become the prev...
Torsten Grust, Jan Rittinger, Jens Teubner