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BMCBI
2011
15 years 1 months ago
Using Stochastic Causal Trees to Augment Bayesian Networks for Modeling eQTL Datasets
Background: The combination of genotypic and genome-wide expression data arising from segregating populations offers an unprecedented opportunity to model and dissect complex phen...
Kyle C. Chipman, Ambuj K. Singh
SODA
2012
ACM
243views Algorithms» more  SODA 2012»
13 years 9 months ago
Bidimensionality and geometric graphs
Bidimensionality theory was introduced by Demaine et al. [JACM 2005 ] as a framework to obtain algorithmic results for hard problems on minor closed graph classes. The theory has ...
Fedor V. Fomin, Daniel Lokshtanov, Saket Saurabh
SIGIR
2010
ACM
15 years 10 months ago
Proximity-based opinion retrieval
Blog post opinion retrieval aims at finding blog posts that are relevant and opinionated about a user’s query. In this paper we propose a simple probabilistic model for assigni...
Shima Gerani, Mark James Carman, Fabio Crestani
BMCBI
2010
132views more  BMCBI 2010»
15 years 6 months ago
Data structures and compression algorithms for high-throughput sequencing technologies
Background: High-throughput sequencing (HTS) technologies play important roles in the life sciences by allowing the rapid parallel sequencing of very large numbers of relatively s...
Kenny Daily, Paul Rigor, Scott Christley, Xiaohui ...
JCB
2008
90views more  JCB 2008»
15 years 6 months ago
A Simple Model of the Modular Structure of Transcriptional Regulation in Yeast
Resolving the general organizational principles that govern the interactions during transcriptional gene regulation has great relevance for understanding disease progression, biof...
Vladimir Filkov, Nameeta Shah