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» Gene Expression Data Management: A Case Study
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BMCBI
2006
108views more  BMCBI 2006»
15 years 6 months ago
Probe set algorithms: is there a rational best bet?
Affymetrix microarrays have become a standard experimental platform for studies of mRNA expression profiling. Their success is due, in part, to the multiple oligonucleotide featur...
Jinwook Seo, Eric P. Hoffman
BMCBI
2006
115views more  BMCBI 2006»
15 years 6 months ago
SimArray: a user-friendly and user-configurable microarray design tool
Background: Microarrays were first developed to assess gene expression but are now also used to map protein-binding sites and to assess allelic variation between individuals. Rega...
Richard P. Auburn, Roslin R. Russell, Bettina Fisc...
BMCBI
2011
15 years 26 days ago
The PathOlogist: An Automated Tool for Pathway-Centric Analysis
Background: The PathOlogist is a new tool designed to transform large sets of gene expression data into quantitative descriptors of pathway-level behavior. The tool aims to provid...
Sharon I. Greenblum, Sol Efroni, Carl F. Schaefer,...
TPHOL
2007
IEEE
16 years 19 days ago
Using XCAP to Certify Realistic Systems Code: Machine Context Management
Formal, modular, and mechanized verification of realistic systems code is desirable but challenging. Verification of machine context management (a basis of multi-tasking) is one ...
Zhaozhong Ni, Dachuan Yu, Zhong Shao
JMLR
2006
96views more  JMLR 2006»
15 years 6 months ago
Rearrangement Clustering: Pitfalls, Remedies, and Applications
Given a matrix of values in which the rows correspond to objects and the columns correspond to features of the objects, rearrangement clustering is the problem of rearranging the ...
Sharlee Climer, Weixiong Zhang