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» Gene Expression Data Management: A Case Study
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POPL
2009
ACM
16 years 1 months ago
Declarative aspects of memory management in the concurrent collections parallel programming model
Concurrent Collections (CnC)[8] is a declarative parallel language that allows the application developer to express their parallel application as a collection of high-level comput...
Zoran Budimlic, Aparna Chandramowlishwaran, Kathle...
SIGMOD
2011
ACM
222views Database» more  SIGMOD 2011»
14 years 9 months ago
Data generation using declarative constraints
We study the problem of generating synthetic databases having declaratively specified characteristics. This problem is motivated by database system and application testing, data ...
Arvind Arasu, Raghav Kaushik, Jian Li
BMCBI
2004
123views more  BMCBI 2004»
15 years 6 months ago
galaxieEST: addressing EST identity through automated phylogenetic analysis
Background: Research involving expressed sequence tags (ESTs) is intricately coupled to the existence of large, well-annotated sequence repositories. Comparatively complete and sa...
R. Henrik Nilsson, Balaji Rajashekar, Karl-Henrik ...
ISBI
2006
IEEE
16 years 7 months ago
A flexible framework for Web interfaces to image databases: supporting user-defined ontologies and links to external databases
Vocabularies to describe research findings are needed to effectively use scientific databases. As understanding of data evolves, scientists need tools for extending the vocabulari...
Josiah Johnston, Arpun Nagaraja, Harry Hochheiser,...
BMCBI
2010
166views more  BMCBI 2010»
15 years 6 months ago
Accurate peak list extraction from proteomic mass spectra for identification and profiling studies
Background: Mass spectrometry is an essential technique in proteomics both to identify the proteins of a biological sample and to compare proteomic profiles of different samples. ...
Nicola Barbarini, Paolo Magni