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» Gene Expression Data Management: A Case Study
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BMCBI
2007
139views more  BMCBI 2007»
15 years 6 months ago
Significance analysis of microarray transcript levels in time series experiments
Background: Microarray time series studies are essential to understand the dynamics of molecular events. In order to limit the analysis to those genes that change expression over ...
Barbara Di Camillo, Gianna Toffolo, Sreekumaran K....
BIBE
2001
IEEE
193views Bioinformatics» more  BIBE 2001»
15 years 10 months ago
GIMS - A Data Warehouse for Storage and Analysis of Genome Sequence and Functional Data
Effective analysis of genome sequences and associated functional data requires access to many different kinds of biological information. For example, when analysing gene expressio...
Mike Cornell, Norman W. Paton, Shengli Wu, Carole ...
BMCBI
2008
125views more  BMCBI 2008»
15 years 6 months ago
XplorSeq: A software environment for integrated management and phylogenetic analysis of metagenomic sequence data
Background: Advances in automated DNA sequencing technology have accelerated the generation of metagenomic DNA sequences, especially environmental ribosomal RNA gene (rDNA) sequen...
Daniel N. Frank
BMCBI
2008
163views more  BMCBI 2008»
15 years 6 months ago
The Annotation, Mapping, Expression and Network (AMEN) suite of tools for molecular systems biology
Background: High-throughput genome biological experiments yield large and multifaceted datasets that require flexible and user-friendly analysis tools to facilitate their interpre...
Frédéric Chalmel, Michael Primig
CIDR
2011
249views Algorithms» more  CIDR 2011»
14 years 10 months ago
The Case for Predictive Database Systems: Opportunities and Challenges
This paper argues that next generation database management systems should incorporate a predictive model management component to effectively support both inward-facing application...
Mert Akdere, Ugur Çetintemel, Matteo Rionda...