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» Gene Expression Data Management: A Case Study
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BMCBI
2006
107views more  BMCBI 2006»
15 years 6 months ago
Evaluation of methods for oligonucleotide array data via quantitative real-time PCR
Background: There are currently many different methods for processing and summarizing probelevel data from Affymetrix oligonucleotide arrays. It is of great interest to validate t...
Li-Xuan Qin, Richard P. Beyer, Francesca N. Hudson...
SEAA
2008
IEEE
16 years 20 days ago
Defect Prediction using Combined Product and Project Metrics - A Case Study from the Open Source "Apache" MyFaces Project Family
The quality evaluation of open source software (OSS) products, e.g., defect estimation and prediction approaches of individual releases, gains importance with increasing OSS adopt...
Dindin Wahyudin, Alexander Schatten, Dietmar Winkl...
RECOMB
2005
Springer
16 years 6 months ago
Lower Bounds for Maximum Parsimony with Gene Order Data
Abstract. In this paper, we study lower bound techniques for branchand-bound algorithms for maximum parsimony, with a focus on gene order data. We give a simple O(n3 ) time dynamic...
Abraham Bachrach, Kevin Chen, Chris Harrelson, Rad...
BIBM
2007
IEEE
137views Bioinformatics» more  BIBM 2007»
16 years 19 days ago
A Multi-metric Similarity Based Analysis of Microarray Data
Clustering has been shown to be effective in analyzing functional relationships of genes. However, no single clustering method with single distance metric is capable of capturing ...
Fatih Altiparmak, Selnur Erdal, Ozgur Ozturk, Haka...
BMCBI
2007
155views more  BMCBI 2007»
15 years 6 months ago
Current approaches to gene regulatory network modelling
Many different approaches have been developed to model and simulate gene regulatory networks. We proposed the following categories for gene regulatory network models: network part...
Thomas Schlitt, Alvis Brazma