Abstract— This paper presents a parametric model to estimate the DNA-protein binding time using the DNA and protein structures and details of the binding site. To understand the ...
Preetam Ghosh, Samik Ghosh, Kalyan Basu, Sajal K. ...
While existing mathematical descriptions can accurately account for phenomena at microscopic scales (e.g. molecular dynamics), these are often high-dimensional, stochastic and thei...
The design and development of complex software systems is a difficult task, and it is not easy to ensure the quality of a developed software. The paper presents an architectural ...
We make the case that Discrete Event System Speci cation DEVS is a universal formalismfor discrete event dynamical systems DEDS. DEVS o ers an expressive framework for modelling, ...
Bernard P. Zeigler, Hae Sang Song, Tag Gon Kim, He...
Background: We have developed the program PERMOL for semi-automated homology modeling of proteins. It is based on restrained molecular dynamics using a simulated annealing protoco...