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RECOMB
2009
Springer
16 years 7 months ago
Lifting Prediction to Alignment of RNA Pseudoknots
Prediction and alignment of RNA pseudoknot structures are NP-hard. Nevertheless, several efficient prediction algorithms by dynamic programming have been proposed for restricted cl...
Mathias Möhl, Rolf Backofen, Sebastian Will
CHI
2005
ACM
16 years 7 months ago
The domestic economy: a broader unit of analysis for end user programming
Domestic ubicomp applications often assume individual users will program and configure their technology in isolation, decoupled from complex domestic environments in which they ar...
Jennifer A. Rode, Eleanor F. Toye, Alan F. Blackwe...
HPCA
2008
IEEE
16 years 7 months ago
Serializing instructions in system-intensive workloads: Amdahl's Law strikes again
Serializing instructions (SIs), such as writes to control registers, have many complex dependencies, and are difficult to execute out-of-order (OoO). To avoid unnecessary complexi...
Philip M. Wells, Gurindar S. Sohi
HPCA
2006
IEEE
16 years 7 months ago
An approach for implementing efficient superscalar CISC processors
An integrated, hardware / software co-designed CISC processor is proposed and analyzed. The objectives are high performance and reduced complexity. Although the x86 ISA is targete...
Shiliang Hu, Ilhyun Kim, Mikko H. Lipasti, James E...
RECOMB
2008
Springer
16 years 7 months ago
CompostBin: A DNA Composition-Based Algorithm for Binning Environmental Shotgun Reads
A major hindrance to studies of microbial diversity has been that the vast majority of microbes cannot be cultured in the laboratory and thus are not amenable to traditional method...
Sourav Chatterji, Ichitaro Yamazaki, Zhaojun Bai, ...