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JCPHY
2011
192views more  JCPHY 2011»
14 years 9 months ago
Fast analysis of molecular dynamics trajectories with graphics processing units - Radial distribution function histogramming
The calculation of radial distribution functions (RDFs) from molecular dynamics trajectory data is a common and computationally expensive analysis task. The rate limiting step in ...
Benjamin G. Levine, John E. Stone, Axel Kohlmeyer
RECOMB
2007
Springer
16 years 7 months ago
Minimizing and Learning Energy Functions for Side-Chain Prediction
Abstract. Side-chain prediction is an important subproblem of the general protein folding problem. Despite much progress in side-chain prediction, performance is far from satisfact...
Chen Yanover, Ora Schueler-Furman, Yair Weiss
TCC
2009
Springer
117views Cryptology» more  TCC 2009»
16 years 7 months ago
Towards a Theory of Extractable Functions
Extractable functions are functions where any adversary that outputs a point in the range of the function is guaranteed to "know" a corresponding preimage. Here, knowledg...
Ran Canetti, Ronny Ramzi Dakdouk
BMCBI
2008
87views more  BMCBI 2008»
15 years 6 months ago
Identification of deleterious non-synonymous single nucleotide polymorphisms using sequence-derived information
Background: As the number of non-synonymous single nucleotide polymorphisms (nsSNPs), also known as single amino acid polymorphisms (SAPs), increases rapidly, computational method...
Jing Hu, Changhui Yan
FATES
2005
Springer
16 years 9 days ago
Simulated Time for Testing Railway Interlockings with TTCN-3
Abstract. Railway control systems are timed and safety-critical. Testing these systems is a key issue. Prior to system testing, the software of a railway control system is tested s...
Stefan Blom, Natalia Ioustinova, Jaco van de Pol, ...