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» Framework for a Protein Ontology
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BMCBI
2008
184views more  BMCBI 2008»
15 years 6 months ago
Integrating protein-protein interactions and text mining for protein function prediction
Background: Functional annotation of proteins remains a challenging task. Currently the scientific literature serves as the main source for yet uncurated functional annotations, b...
Samira Jaeger, Sylvain Gaudan, Ulf Leser, Dietrich...
LPAR
2005
Springer
15 years 11 months ago
A New Constraint Solver for 3D Lattices and Its Application to the Protein Folding Problem
Abstract. The paper describes the formalization and implementation of an efficient constraint programming framework operating on 3D crystal lattices. The framework is motivated an...
Alessandro Dal Palù, Agostino Dovier, Enric...
BIBE
2006
IEEE
184views Bioinformatics» more  BIBE 2006»
16 years 6 days ago
A Language Modeling Text Mining Approach to the Annotation of Protein Community
This paper discusses an ontology based language modeling text mining approach to the annotation of protein community. Communities appear to play an important role in the functional...
Xiaodan Zhang, Daniel Duanqing Wu, Xiaohua Zhou, X...
AAAI
2008
15 years 8 months ago
An Architecture and Formalism for Handling Modular Ontologies
The goal of my ongoing work is to provide an architecture for developing and manipulating modular ontologies in such a way that each ontology module can plug into or unplug from a...
Faezeh Ensan
NAR
2010
107views more  NAR 2010»
15 years 28 days ago
FlyTF: improved annotation and enhanced functionality of the Drosophila transcription factor database
FlyTF (http://www.flytf.org) is a database of computationally predicted and/or experimentally verified site-specific transcription factors (TFs) in the fruit fly Drosophila melano...
Ulrike Pfreundt, Daniel P. James, Susan Tweedie, D...