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BMCBI
2002
131views more  BMCBI 2002»
15 years 7 months ago
Efficient Boolean implementation of universal sequence maps (bUSM)
Background: Recently, Almeida and Vinga offered a new approach for the representation of arbitrary discrete sequences, referred to as Universal Sequence Maps (USM), and discussed ...
John Schwacke, Jonas S. Almeida
PVLDB
2010
129views more  PVLDB 2010»
15 years 5 months ago
iGraph: A Framework for Comparisons of Disk-Based Graph Indexing Techniques
Graphs are of growing importance in modeling complex structures such as chemical compounds, proteins, images, and program dependence. Given a query graph Q, the subgraph isomorphi...
Wook-Shin Han, Jinsoo Lee, Minh-Duc Pham, Jeffrey ...
FPL
2010
Springer
188views Hardware» more  FPL 2010»
15 years 5 months ago
SeqHive: A Reconfigurable Computer Cluster for Genome Re-sequencing
We demonstrate how Field Programmable Gate Arrays (FPGAs) may be used to address the computing challenges associated with assembling genome sequences from recent ultra-high-through...
Kristian Stevens, Henry Chen, Terry Filiba, Peter ...
ALENEX
2009
172views Algorithms» more  ALENEX 2009»
15 years 5 months ago
Rank Aggregation: Together We're Strong
We consider the problem of finding a ranking of a set of elements that is "closest to" a given set of input rankings of the elements; more precisely, we want to find a p...
Frans Schalekamp, Anke van Zuylen
BMCBI
2011
15 years 2 months ago
Accurate statistics for local sequence alignment with position-dependent scoring by rare-event sampling
Background: Molecular database search tools need statistical models to assess the significance for the resulting hits. In the classical approach one asks the question how probable...
Stefan Wolfsheimer, Inke Herms, Sven Rahmann, Alex...
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