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BMCBI
2007
186views more  BMCBI 2007»
15 years 7 months ago
GeneBins: a database for classifying gene expression data, with application to plant genome arrays
Background: To interpret microarray experiments, several ontological analysis tools have been developed. However, current tools are limited to specific organisms. Results: We deve...
Nicolas Goffard, Georg Weiller
NAR
2008
107views more  NAR 2008»
15 years 6 months ago
ISPIDER Central: an integrated database web-server for proteomics
Despite the growing volumes of proteomic data, integration of the underlying results remains problematic owing to differences in formats, data captured, protein accessions and ser...
Jennifer A. Siepen, Khalid Belhajjame, Julian N. S...
BMCBI
2002
137views more  BMCBI 2002»
15 years 6 months ago
ORFer - retrieval of protein sequences and open reading frames from GenBank and storage into relational databases or text files
Background: Functional genomics involves the parallel experimentation with large sets of proteins. This requires management of large sets of open reading frames as a prerequisite ...
Konrad Büssow, Steve Hoffmann, Volker Sievert
BMCBI
2008
128views more  BMCBI 2008»
15 years 6 months ago
In silico analysis of expressed sequence tags from Trichostrongylus vitrinus (Nematoda): comparison of the automated ESTExplorer
Background: The analysis of expressed sequence tags (EST) offers a rapid and cost effective approach to elucidate the transcriptome of an organism, but requires several computatio...
Shivashankar H. Nagaraj, Robin B. Gasser, Alasdair...
ICOODB
2010
117views Database» more  ICOODB 2010»
15 years 5 months ago
iBLOB: Complex Object Management in Databases through Intelligent Binary Large Objects
Abstract. New emerging applications including genomic, multimedia, and geospatial technologies have necessitated the handling of complex application objects that are highly structu...
Tao Chen, Arif Khan, Markus Schneider, Ganesh Visw...