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BMCBI
2007
115views more  BMCBI 2007»
15 years 6 months ago
A novel, fast, HMM-with-Duration implementation - for application with a new, pattern recognition informed, nanopore detector
Background: Hidden Markov Models (HMMs) provide an excellent means for structure identification and feature extraction on stochastic sequential data. An HMM-with-Duration (HMMwD) ...
Stephen Winters-Hilt, Carl Baribault
BMCBI
2005
169views more  BMCBI 2005»
15 years 6 months ago
MAPPER: a search engine for the computational identification of putative transcription factor binding sites in multiple genomes
Background: Cis-regulatory modules are combinations of regulatory elements occurring in close proximity to each other that control the spatial and temporal expression of genes. Th...
Voichita D. Marinescu, Isaac S. Kohane, Alberto Ri...
BMCBI
2005
116views more  BMCBI 2005»
15 years 6 months ago
SuperLigands - a database of ligand structures derived from the Protein Data Bank
Background: Currently, the PDB contains approximately 29,000 protein structures comprising over 70,000 experimentally determined three-dimensional structures of over 5,000 differe...
Elke Michalsky, Mathias Dunkel, Andrean Goede, Rob...
JMLR
2011
117views more  JMLR 2011»
15 years 1 months ago
Parameter Screening and Optimisation for ILP using Designed Experiments
Reports of experiments conducted with an Inductive Logic Programming system rarely describe how specific values of parameters of the system are arrived at when constructing model...
Ashwin Srinivasan, Ganesh Ramakrishnan
JORS
2010
189views more  JORS 2010»
15 years 1 months ago
Monte Carlo scenario generation for retail loan portfolios
Monte Carlo simulation is a common method for studying the volatility of market traded instruments. It is less employed in retail lending, because of the inherent nonlinearities in...
J. L. Breeden, D. Ingram