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BMCBI
2006
92views more  BMCBI 2006»
15 years 6 months ago
A jumping profile Hidden Markov Model and applications to recombination sites in HIV and HCV genomes
Background: Jumping alignments have recently been proposed as a strategy to search a given multiple sequence alignment A against a database. Instead of comparing a database sequen...
Anne-Kathrin Schultz, Ming Zhang, Thomas Leitner, ...
BMCBI
2007
218views more  BMCBI 2007»
15 years 6 months ago
Annotation and query of tissue microarray data using the NCI Thesaurus
Background: The Stanford Tissue Microarray Database (TMAD) is a repository of data serving a consortium of pathologists and biomedical researchers. The tissue samples in TMAD are ...
Nigam H. Shah, Daniel L. Rubin, Inigo Espinosa, Ke...
BMCBI
2007
165views more  BMCBI 2007»
15 years 6 months ago
Automatic reconstruction of a bacterial regulatory network using Natural Language Processing
Background: Manual curation of biological databases, an expensive and labor-intensive process, is essential for high quality integrated data. In this paper we report the implement...
Carlos Rodríguez Penagos, Heladia Salgado, ...
SIGMOD
2012
ACM
190views Database» more  SIGMOD 2012»
13 years 9 months ago
Sample-driven schema mapping
End-users increasingly find the need to perform light-weight, customized schema mapping. State-of-the-art tools provide powerful functions to generate schema mappings, but they u...
Li Qian, Michael J. Cafarella, H. V. Jagadish
ICDE
2012
IEEE
269views Database» more  ICDE 2012»
13 years 9 months ago
A Deep Embedding of Queries into Ruby
—We demonstrate SWITCH, a deep embedding of relational queries into RUBY and RUBY on RAILS. With SWITCH, there is no syntactic or stylistic difference between RUBY programs that ...
Torsten Grust, Manuel Mayr