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» Fast Protein Structure Alignment
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ICASSP
2007
IEEE
16 years 5 days ago
Protein Fold Recognition using Residue-Based Alignments of Sequence and Secondary Structure
Protein structure prediction aims to determine the three-dimensional structure of proteins form their amino acid sequences. When a protein does not have similarity (homology) to a...
Zafer Aydin, Hakan Erdogan, Yucel Altunbasak
JCB
2008
106views more  JCB 2008»
15 years 5 months ago
Statistics of Random Protein Superpositions: p-Values for Pairwise Structure Alignment
Quantification of statistical significance is essential for the interpretation of protein structural similarity. To address this, a random model for protein structure comparison w...
James O. Wrabl, Nick V. Grishin
ICPP
2003
IEEE
15 years 11 months ago
FastLSA: A Fast, Linear-Space, Parallel and Sequential Algorithm for Sequence Alignment
Pairwise sequence alignment is a fundamental operation for homology search in bioinformatics. For two DNA or protein sequences of length ¢ and £ , full-matrix (FM), dynamic prog...
Adrian Driga, Paul Lu, Jonathan Schaeffer, Duane S...
GCB
2005
Springer
117views Biometrics» more  GCB 2005»
15 years 11 months ago
Generation of 3D templates of active sites of proteins with rigid prosthetic groups
Motivation: With the increasing availability of protein structures, the generation of biologically meaningful 3D patterns from the simultaneous alignment of several protein struct...
Jean-Christophe Nebel
KDD
2004
ACM
115views Data Mining» more  KDD 2004»
16 years 6 months ago
A New Approach to Protein Structure Mining and Alignment
Hongyuan Li, Keith Marsolo, Srinivasan Parthasarat...