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BMCBI
2008
103views more  BMCBI 2008»
15 years 6 months ago
Parameter estimation for robust HMM analysis of ChIP-chip data
Background: Tiling arrays are an important tool for the study of transcriptional activity, proteinDNA interactions and chromatin structure on a genome-wide scale at high resolutio...
Peter Humburg, David Bulger, Glenn Stone
BMCBI
2005
122views more  BMCBI 2005»
15 years 6 months ago
Quantitative analysis of EGR proteins binding to DNA: assessing additivity in both the binding site and the protein
Background: Recognition codes for protein-DNA interactions typically assume that the interacting positions contribute additively to the binding energy. While this is known to not ...
Jiajian Liu, Gary D. Stormo
BMCBI
2005
145views more  BMCBI 2005»
15 years 6 months ago
CAGER: classification analysis of gene expression regulation using multiple information sources
Background: Many classification approaches have been applied to analyzing transcriptional regulation of gene expressions. These methods build models that can explain a gene's...
Jianhua Ruan, Weixiong Zhang
TSE
2002
105views more  TSE 2002»
15 years 6 months ago
Disaggregating and Calibrating the CASE Tool Variable in COCOMO II
CASE (Computer Aided Software Engineering) tools are believed to have played a critical role in improving software productivity and quality by assisting tasks in software developme...
Jongmoon Baik, Barry W. Boehm, Bert Steece
KDD
2001
ACM
253views Data Mining» more  KDD 2001»
16 years 7 months ago
GESS: a scalable similarity-join algorithm for mining large data sets in high dimensional spaces
The similarity join is an important operation for mining high-dimensional feature spaces. Given two data sets, the similarity join computes all tuples (x, y) that are within a dis...
Jens-Peter Dittrich, Bernhard Seeger