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SODA
2008
ACM
88views Algorithms» more  SODA 2008»
15 years 7 months ago
Sampling stable marriages: why spouse-swapping won't work
We study the behavior of random walks along the edges of the stable marriage lattice for various restricted families of allowable preference sets. In the "k-attribute model,&...
Nayantara Bhatnagar, Sam Greenberg, Dana Randall
BMCBI
2006
112views more  BMCBI 2006»
15 years 6 months ago
Algorithms for incorporating prior topological information in HMMs: application to transmembrane proteins
Background: Hidden Markov Models (HMMs) have been extensively used in computational molecular biology, for modelling protein and nucleic acid sequences. In many applications, such...
Pantelis G. Bagos, Theodore D. Liakopoulos, Stavro...
BMCBI
2005
60views more  BMCBI 2005»
15 years 6 months ago
PHACCS, an online tool for estimating the structure and diversity of uncultured viral communities using metagenomic information
Background: Phages, viruses that infect prokaryotes, are the most abundant microbes in the world. A major limitation to studying these viruses is the difficulty of cultivating the...
Florent Angly, Beltran Rodriguez-Brito, David Bang...
JCB
1998
92views more  JCB 1998»
15 years 6 months ago
Homology Detection via Family Pairwise Search
The function of an unknown biological sequence can often be accurately inferred by identifying sequences homologous to the original sequence. Given a query set of known homologs, ...
William Noble Grundy
SIGPRO
2010
103views more  SIGPRO 2010»
15 years 4 months ago
Optimal design of high-performance separable wavelet filter banks for image coding
An optimization-based method is proposed for the design of high-performance separable wavelet filter banks for image coding. This method yields linear-phase perfect-reconstructio...
Michael D. Adams, Di Xu