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IJKDB
2010
170views more  IJKDB 2010»
15 years 3 months ago
Clustering Genes Using Heterogeneous Data Sources
Clustering of gene expression data is a standard exploratory technique used to identify closely related genes. Many other sources of data are also likely to be of great assistance...
Erliang Zeng, Chengyong Yang, Tao Li, Giri Narasim...
BMCBI
2010
118views more  BMCBI 2010»
15 years 6 months ago
Bacillus anthracis genome organization in light of whole transcriptome sequencing
Emerging knowledge of whole prokaryotic transcriptomes could validate a number of theoretical concepts introduced in the early days of genomics. What are the rules connecting gene...
Jeffrey Martin, Wenhan Zhu, Karla D. Passalacqua, ...
BMCBI
2007
152views more  BMCBI 2007»
15 years 6 months ago
Difference-based clustering of short time-course microarray data with replicates
Background: There are some limitations associated with conventional clustering methods for short time-course gene expression data. The current algorithms require prior domain know...
Jihoon Kim, Ju Han Kim
BMCBI
2008
138views more  BMCBI 2008»
15 years 6 months ago
Novel implementation of conditional co-regulation by graph theory to derive co-expressed genes from microarray data
Background: Most existing transcriptional databases like Comprehensive Systems-Biology Database (CSB.DB) and Arabidopsis Microarray Database and Analysis Toolbox (GENEVESTIGATOR) ...
Arun Rawat, Georg J. Seifert, Youping Deng
BMCBI
2006
182views more  BMCBI 2006»
15 years 6 months ago
AceTree: a tool for visual analysis of Caenorhabditis elegans embryogenesis
Background: The invariant lineage of the nematode Caenorhabditis elegans has potential as a powerful tool for the description of mutant phenotypes and gene expression patterns. We...
Thomas J. Boyle, Zhirong Bao, John I. Murray, Carl...