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POPL
2004
ACM
16 years 7 months ago
Parsing expression grammars: a recognition-based syntactic foundation
For decades we have been using Chomsky's generative system of grammars, particularly context-free grammars (CFGs) and regular expressions (REs), to express the syntax of prog...
Bryan Ford
BMCBI
2007
109views more  BMCBI 2007»
15 years 6 months ago
TABASCO: A single molecule, base-pair resolved gene expression simulator
Background: Experimental studies of gene expression have identified some of the individual molecular components and elementary reactions that comprise and control cellular behavio...
Sriram Kosuri, Jason R. Kelly, Drew Endy
VMCAI
2010
Springer
16 years 3 months ago
Building a Calculus of Data Structures
Abstract. Techniques such as verification condition generation, preditraction, and expressive type systems reduce software verification to proving formulas in expressive logics. Pr...
Viktor Kuncak, Ruzica Piskac, Philippe Suter, Thom...
197
Voted
BMCBI
2007
112views more  BMCBI 2007»
15 years 6 months ago
Inferring biological functions and associated transcriptional regulators using gene set expression coherence analysis
Background: Gene clustering has been widely used to group genes with similar expression pattern in microarray data analysis. Subsequent enrichment analysis using predefined gene s...
Tae-Min Kim, Yeun-Jun Chung, Mun-Gan Rhyu, Myeong ...
ICDE
2005
IEEE
101views Database» more  ICDE 2005»
16 years 8 days ago
Optimization of Nested XQuery Expressions with Orderby Clauses
— XQuery, the defacto XML query language, is a functional language with operational semantics, which precludes the direct application of classical query optimization techniques. ...
Song Wang, Elke A. Rundensteiner, Murali Mani