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ARC
2007
Springer
140views Hardware» more  ARC 2007»
15 years 10 months ago
Reconfigurable Computing for Accelerating Protein Folding Simulations
Abstract. This paper presents a methodology for the design of a reconfigurable computing system applied to a complex problem in molecular Biology: the protein folding problem. An e...
Nilton B. Armstrong, Heitor S. Lopes, Carlos R. Er...
CSDA
2008
65views more  CSDA 2008»
15 years 6 months ago
Improving updating rules in multiplicative algorithms for computing D-optimal designs
In this paper we discuss a class of multiplicative algorithms for computing D-optimal designs for regression models on a finite design space. We prove a monotonicity result for a ...
Holger Dette, Andrey Pepelyshev, Anatoly A. Zhiglj...
BMCBI
2007
233views more  BMCBI 2007»
15 years 6 months ago
160-fold acceleration of the Smith-Waterman algorithm using a field programmable gate array (FPGA)
Background: To infer homology and subsequently gene function, the Smith-Waterman (SW) algorithm is used to find the optimal local alignment between two sequences. When searching s...
Isaac T. S. Li, Warren Shum, Kevin Truong
CCCG
2008
15 years 8 months ago
Computational Balloon Twisting: The Theory of Balloon Polyhedra
This paper builds a general mathematical and algorithmic theory for balloon-twisting structures, from balloon animals to balloon polyhedra, by modeling their underlying graphs (ed...
Erik D. Demaine, Martin L. Demaine, Vi Hart
ISTA
2007
15 years 8 months ago
Analytical data modeling of investment project financing process
: The present work is devoted to the research of investment projects’ financing issues. Within this paper a data analytical tool for an optimal financing schema computation on th...
Mikhail D. Godlevskiy, Valentina V. Moskalenko, Vl...