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EUROGP
2005
Springer
15 years 12 months ago
Evolving L-Systems to Capture Protein Structure Native Conformations
Abstract. A protein is a linear chain of amino acids that folds into a unique functional structure, called its native state. In this state, proteins show repeated substructures lik...
Gabi Escuela, Gabriela Ochoa, Natalio Krasnogor
GECCO
2005
Springer
144views Optimization» more  GECCO 2005»
15 years 12 months ago
Multiobjective hBOA, clustering, and scalability
This paper describes a scalable algorithm for solving multiobjective decomposable problems by combining the hierarchical Bayesian optimization algorithm (hBOA) with the nondominat...
Martin Pelikan, Kumara Sastry, David E. Goldberg
JCB
2002
108views more  JCB 2002»
15 years 6 months ago
Fast and Accurate Phylogeny Reconstruction Algorithms Based on the Minimum-Evolution Principle
This paper investigates the standard ordinary least-squares version 24 and the balanced version 20 of the minimum evolution principle. For the standard version, we provide a greedy...
Richard Desper, Olivier Gascuel
BMCBI
2011
15 years 1 months ago
Taxon ordering in phylogenetic trees: a workbench test
Background: Phylogenetic trees are an important tool for representing evolutionary relationships among organisms. In a phylogram or chronogram, the ordering of taxa is not conside...
Francesco Cerutti, Luigi Bertolotti, Tony L. Goldb...
TEC
2012
195views Formal Methods» more  TEC 2012»
13 years 8 months ago
The Effects of Constant and Bit-Wise Neutrality on Problem Hardness, Fitness Distance Correlation and Phenotypic Mutation Rates
Kimura’s neutral theory of evolution has inspired researchers from the evolutionary computation community to incorporate neutrality into Evolutionary Algorithms (EAs) in the hop...
Riccardo Poli, Edgar Galván López