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» Evaluation of clustering algorithms for gene expression data
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BMCBI
2010
160views more  BMCBI 2010»
15 years 6 months ago
Annotation of gene promoters by integrative data-mining of ChIP-seq Pol-II enrichment data
Background: Use of alternative gene promoters that drive widespread cell-type, tissue-type or developmental gene regulation in mammalian genomes is a common phenomenon. Chromatin ...
Ravi Gupta, Priyankara Wikramasinghe, Anirban Bhat...
BMCBI
2008
137views more  BMCBI 2008»
15 years 6 months ago
VennMaster: Area-proportional Euler diagrams for functional GO analysis of microarrays
Background: Microarray experiments generate vast amounts of data. The functional context of differentially expressed genes can be assessed by querying the Gene Ontology (GO) datab...
Hans A. Kestler, André Müller, Johann ...
BMCBI
2010
108views more  BMCBI 2010»
15 years 1 months ago
Preferred analysis methods for Affymetrix GeneChips. II. An expanded, balanced, wholly-defined spike-in dataset
Background: Concomitant with the rise in the popularity of DNA microarrays has been a surge of proposed methods for the analysis of microarray data. Fully controlled "spike-i...
Qianqian Zhu, Jeffrey C. Miecznikowski, Marc S. Ha...
TKDE
2008
115views more  TKDE 2008»
15 years 6 months ago
A Niching Memetic Algorithm for Simultaneous Clustering and Feature Selection
Clustering is inherently a difficult task and is made even more difficult when the selection of relevant features is also an issue. In this paper, we propose an approach for simult...
Weiguo Sheng, Xiaohui Liu, Michael C. Fairhurst
BMCBI
2004
149views more  BMCBI 2004»
15 years 6 months ago
MiCoViTo: a tool for gene-centric comparison and visualization of yeast transcriptome states
Background: Information obtained by DNA microarray technology gives a rough snapshot of the transcriptome state, i.e., the expression level of all the genes expressed in a cell po...
Gaëlle Lelandais, Philippe Marc, Pierre Vince...