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» Evaluation of clustering algorithms for gene expression data
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WABI
2010
Springer
177views Bioinformatics» more  WABI 2010»
15 years 5 months ago
Estimation of Alternative Splicing isoform Frequencies from RNA-Seq Data
In this paper we present a novel expectation-maximization algorithm for inference of alternative splicing isoform frequencies from high-throughput transcriptome sequencing (RNA-Seq...
Marius Nicolae, Serghei Mangul, Ion I. Mandoiu, Al...
DATAMINE
2006
157views more  DATAMINE 2006»
15 years 6 months ago
Data Clustering with Partial Supervision
Clustering with partial supervision finds its application in situations where data is neither entirely nor accurately labeled. This paper discusses a semisupervised clustering algo...
Abdelhamid Bouchachia, Witold Pedrycz
COCOON
2005
Springer
16 years 4 days ago
Perfect Sorting by Reversals
In computational biology, gene order data is often modelled as signed permutations. A classical problem in genome comparison is to detect conserved segments in a permutation, that ...
Marie-France Sagot, Eric Tannier
BMCBI
2004
106views more  BMCBI 2004»
15 years 6 months ago
Spotting effect in microarray experiments
Background: Microarray data must be normalized because they suffer from multiple biases. We have identified a source of spatial experimental variability that significantly affects...
Tristan Mary-Huard, Jean-Jacques Daudin, Sté...
IGARSS
2009
15 years 4 months ago
Reducing the Dimensionality of Hyperspectral Data using Diffusion Maps
We examine the analysis of hyperspectral data produced by the Hyperspectral Core Imager of AngloGold Ashanti. The dimension of the data is reduced using diffusion maps and the dat...
Luis du Plessis, Steven Damelin, Michael Sears