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» Evaluation of clustering algorithms for gene expression data
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SDM
2004
SIAM
162views Data Mining» more  SDM 2004»
15 years 8 months ago
Subspace Clustering of High Dimensional Data
Clustering suffers from the curse of dimensionality, and similarity functions that use all input features with equal relevance may not be effective. We introduce an algorithm that...
Carlotta Domeniconi, Dimitris Papadopoulos, Dimitr...
NN
2007
Springer
267views Neural Networks» more  NN 2007»
15 years 6 months ago
Modeling of gene regulatory networks with hybrid differential evolution and particle swarm optimization
In the last decade, recurrent neural networks (RNNs) have attracted more efforts in inferring genetic regulatory networks (GRNs), using time series gene expression data from micro...
Rui Xu, Ganesh K. Venayagamoorthy, Donald C. Wunsc...
KDD
2004
ACM
624views Data Mining» more  KDD 2004»
15 years 12 months ago
Programming the K-means clustering algorithm in SQL
Using SQL has not been considered an efficient and feasible way to implement data mining algorithms. Although this is true for many data mining, machine learning and statistical a...
Carlos Ordonez
BMCBI
2008
129views more  BMCBI 2008»
15 years 6 months ago
Gene set enrichment analysis for non-monotone association and multiple experimental categories
Background: Recently, microarray data analyses using functional pathway information, e.g., gene set enrichment analysis (GSEA) and significance analysis of function and expression...
Rongheng Lin, Shuangshuang Dai, Richard D. Irwin, ...
BMCBI
2007
120views more  BMCBI 2007»
15 years 6 months ago
Transcript-based redefinition of grouped oligonucleotide probe sets using AceView: High-resolution annotation for microarrays
Background: Extracting biological information from high-density Affymetrix arrays is a multi-step process that begins with the accurate annotation of microarray probes. Shortfalls...
Jun Lu, Joseph C. Lee, Marc L. Salit, Margaret C. ...