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BMCBI
2010
178views more  BMCBI 2010»
15 years 6 months ago
An improved method for scoring protein-protein interactions using semantic similarity within the Gene Ontology
Background: Semantic similarity measures are useful to assess the physiological relevance of protein-protein interactions (PPIs). They quantify similarity between proteins based o...
Shobhit Jain, Gary D. Bader
BMCBI
2008
119views more  BMCBI 2008»
15 years 6 months ago
Gene Ontology density estimation and discourse analysis for automatic GeneRiF extraction
Background: This paper describes and evaluates a sentence selection engine that extracts a GeneRiF (Gene Reference into Functions) as defined in ENTREZ-Gene based on a MEDLINE rec...
Julien Gobeill, Imad Tbahriti, Frédé...
BMCBI
2006
152views more  BMCBI 2006»
15 years 6 months ago
Amplification of the Gene Ontology annotation of Affymetrix probe sets
Background: The annotations of Affymetrix DNA microarray probe sets with Gene Ontology terms are carefully selected for correctness. This results in very accurate but incomplete a...
Enrique M. Muro, Carolina Perez-Iratxeta, Miguel A...
WEBI
2010
Springer
15 years 4 months ago
A Scalable Indexing Mechanism for Ontology-Based Information Integration
In recent years, there has been an explosion of publicly available RDF and OWL web pages. Some of these pages are static text files, while others are dynamically generated from la...
Yingjie Li, Abir Qasem, Jeff Heflin
BMCBI
2011
14 years 10 months ago
Computable visually observed phenotype ontological framework for plants
Background: The ability to search for and precisely compare similar phenotypic appearances within and across species has vast potential in plant science and genetic research. The ...
Jaturon Harnsomburana, Jason M. Green, Adrian S. B...