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BMCBI
2007
125views more  BMCBI 2007»
15 years 7 months ago
Statistical tests to compare motif count exceptionalities
Background: Finding over- or under-represented motifs in biological sequences is now a common task in genomics. Thanks to p-value calculation for motif counts, exceptional motifs ...
Stéphane Robin, Sophie Schbath, Vincent Van...
BMCBI
2008
220views more  BMCBI 2008»
15 years 7 months ago
Gene prediction in metagenomic fragments: A large scale machine learning approach
Background: Metagenomics is an approach to the characterization of microbial genomes via the direct isolation of genomic sequences from the environment without prior cultivation. ...
Katharina J. Hoff, Maike Tech, Thomas Lingner, Rol...
NAR
2006
119views more  NAR 2006»
15 years 6 months ago
ChloroplastDB: the Chloroplast Genome Database
The Chloroplast Genome Database (ChloroplastDB) is an interactive, web-based database for fully sequenced plastid genomes, containing genomic, protein, DNA and RNA sequences, gene...
Liying Cui, Narayanan Veeraraghavan, Alexander Ric...
SIGSOFT
2004
ACM
16 years 7 months ago
PSE: explaining program failures via postmortem static analysis
In this paper, we describe PSE (Postmortem Symbolic Evaluation), a static analysis algorithm that can be used by programmers to diagnose software failures. The algorithm requires ...
Roman Manevich, Manu Sridharan, Stephen Adams, Man...
BMCBI
2011
14 years 10 months ago
Study of large and highly stratified population datasets by combining iterative pruning principal component analysis and STRUCTU
Background: The ever increasing sizes of population genetic datasets pose great challenges for population structure analysis. The Tracy-Widom (TW) statistical test is widely used ...
Tulaya Limpiti, Apichart Intarapanich, Anunchai As...