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NAR
2008
125views more  NAR 2008»
15 years 6 months ago
Phylogeny.fr: robust phylogenetic analysis for the non-specialist
Phylogenetic analyses are central to many research areas in biology and typically involve the identification of homologous sequences, their multiple alignment, the phylogenetic re...
Alexis Dereeper, V. Guignon, G. Blanc, Stép...
BMCBI
2005
173views more  BMCBI 2005»
15 years 6 months ago
Phydbac "Gene Function Predictor" : a gene annotation tool based on genomic context analysis
Background: The large amount of completely sequenced genomes allows genomic context analysis to predict reliable functional associations between prokaryotic proteins. Major method...
François Enault, Karsten Suhre, Jean-Michel...
STAIRS
2008
175views Education» more  STAIRS 2008»
15 years 8 months ago
Learning Process Behavior with EDY: an Experimental Analysis
This paper presents an extensive evaluation, on artificial datasets, of EDY, an unsupervised algorithm for automatically synthesizing a Structured Hidden Markov Model (S-HMM) from ...
Ugo Galassi
BMCBI
2007
136views more  BMCBI 2007»
15 years 6 months ago
Genomorama: genome visualization and analysis
Background: The ability to visualize genomic features and design experimental assays that can target specific regions of a genome is essential for modern biology. To assist in the...
Jason D. Gans, Murray Wolinsky
BMCBI
2008
84views more  BMCBI 2008»
15 years 6 months ago
The comparative analysis of statistics, based on the likelihood ratio criterion, in the automated annotation problem
Background: This paper discusses the problem of automated annotation. It is a continuation of the previous work on the A4-algorithm (Adaptive algorithm of automated annotation) de...
Andrey M. Leontovich, Konstantin Y. Tokmachev, Han...