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BMCBI
2010
148views more  BMCBI 2010»
15 years 6 months ago
Calling SNPs without a reference sequence
Background: The most common application for the next-generation sequencing technologies is resequencing, where short reads from the genome of an individual are aligned to a refere...
Aakrosh Ratan, Yu Zhang, Vanessa M. Hayes, Stephan...
BMCBI
2010
142views more  BMCBI 2010»
15 years 6 months ago
Classification of protein sequences by means of irredundant patterns
Background: The classification of protein sequences using string algorithms provides valuable insights for protein function prediction. Several methods, based on a variety of diff...
Matteo Comin, Davide Verzotto
BMCBI
2005
158views more  BMCBI 2005»
15 years 6 months ago
Automated generation of heuristics for biological sequence comparison
Background: Exhaustive methods of sequence alignment are accurate but slow, whereas heuristic approaches run quickly, but their complexity makes them more difficult to implement. ...
Guy St. C. Slater, Ewan Birney
ICDM
2009
IEEE
259views Data Mining» more  ICDM 2009»
15 years 4 months ago
Topic Modeling for Sequences of Temporal Activities
: Topic Modeling for Sequences of Temporal Activities Zhi-Yong Shen, Ping Luo, Yuhong Xiong, Jun Sun, Yi-Dong Shen HP Laboratories HPL-2010-160 topic modeling, LDA, sequence, temp...
Zhiyong Shen, Ping Luo, Yuhong Xiong, Jun Sun, Yi-...
CIVR
2009
Springer
212views Image Analysis» more  CIVR 2009»
16 years 1 months ago
Video copy detection by fast sequence matching
Sequence matching techniques are effective for comparing two videos. However, existing approaches suffer from demanding computational costs and thus are not scalable for large-sca...
Mei-Chen Yeh, Kwang-Ting Cheng