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COMPSAC
2007
IEEE
16 years 27 days ago
Visualization of Concurrent Program Executions
Various program analysis techniques are efficient at discovering failures and properties. However, it is often difficult to evaluate results, such as program traces. ls for abst...
Cyrille Artho, Klaus Havelund, Shinichi Honiden
PLDI
2006
ACM
16 years 15 days ago
SAFECode: enforcing alias analysis for weakly typed languages
Static analysis of programs in weakly typed languages such as C and C++ is generally not sound because of possible memory errors due to dangling pointer references, uninitialized ...
Dinakar Dhurjati, Sumant Kowshik, Vikram S. Adve
BMCBI
2005
106views more  BMCBI 2005»
15 years 6 months ago
SIMPROT: Using an empirically determined indel distribution in simulations of protein evolution
Background: General protein evolution models help determine the baseline expectations for the evolution of sequences, and they have been extensively useful in sequence analysis an...
Andy Pang, Andrew D. Smith, Paulo A. S. Nuin, Elis...
HPDC
2010
IEEE
15 years 7 months ago
Modeling sequence and function similarity between proteins for protein functional annotation
A common task in biological research is to predict function for proteins by comparing sequences between proteins of known and unknown function. This is often done using pair-wise ...
Roger Higdon, Brenton Louie, Eugene Kolker
BMCBI
2002
137views more  BMCBI 2002»
15 years 6 months ago
ORFer - retrieval of protein sequences and open reading frames from GenBank and storage into relational databases or text files
Background: Functional genomics involves the parallel experimentation with large sets of proteins. This requires management of large sets of open reading frames as a prerequisite ...
Konrad Büssow, Steve Hoffmann, Volker Sievert