A suffix tree is a fundamental data structure for string searching algorithms. Unfortunately, when it comes to the use of suffix trees in real-life applications, the current metho...
Marina Barsky, Ulrike Stege, Alex Thomo, Chris Upt...
Recent studies in protein sequence analysis have leveraged the power of unlabeled data. For example, the profile and mismatch neighborhood kernels have shown significant improveme...
Motivation: To test whether protein folding constraints and secondary structure sequence preferences significantly reduce the space of amino acid words in proteins, we compared th...
The ROADEF challenge is organized every two years by the French Society of Operations Research and Decision-Making Aid. The goal is to allow industrial partners to witness recent ...
Christine Solnon, Van Dat Cung, Alain Nguyen, Chri...
An ever greater range of applications call for learning from sequences. Grammar induction is one prominent tool for sequence learning, it is therefore important to know its proper...