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TCBB
2008
76views more  TCBB 2008»
15 years 6 months ago
Hadamard Conjugation for the Kimura 3ST Model: Combinatorial Proof Using Path Sets
Under a stochastic model of molecular sequence evolution the probability of each possible pattern of characters is well defined. The Kimura's three-substitution-types (K3ST) m...
Michael D. Hendy, Sagi Snir
BMCBI
2005
132views more  BMCBI 2005»
15 years 6 months ago
Kalign - an accurate and fast multiple sequence alignment algorithm
Background: The alignment of multiple protein sequences is a fundamental step in the analysis of biological data. It has traditionally been applied to analyzing protein families f...
Timo Lassmann, Erik L. L. Sonnhammer
WIAMIS
2009
IEEE
16 years 1 months ago
Archive film defect detection based on a hidden Markov model
We propose a novel statistical approach to detect defects in digitized archive film by using temporal information across a number of frames modeled with an HMM. The HMM is traine...
Xiaosong Wang, Majid Mirmehdi
BMCBI
2006
242views more  BMCBI 2006»
15 years 6 months ago
Predicting residue-wise contact orders in proteins by support vector regression
Background: The residue-wise contact order (RWCO) describes the sequence separations between the residues of interest and its contacting residues in a protein sequence. It is a ne...
Jiangning Song, Kevin Burrage
BMCBI
2010
120views more  BMCBI 2010»
15 years 6 months ago
Short clones or long clones? A simulation study on the use of paired reads in metagenomics
Background: Metagenomics is the study of environmental samples using sequencing. Rapid advances in sequencing technology are fueling a vast increase in the number and scope of met...
Suparna Mitra, Max Schubach, Daniel H. Huson